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DELIVERY OF
BOOKS
The delivery time for books varies with the different
suppliers, so we are unable to give a specific delivery time. If
in stock it will be approximately 5 days, if not in stock 2 to 3
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Tietz's
Applied Laboratory Medicine
by Mitchell G. Scott,
Ann M. Gronowski, Charles S. Eby, and Norbert W. Tietz |
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Cat.# JW-LABM1 |
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Published: 2007 ISBN:
9780471714576 |
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Using a problem-based approach, Tietz's Applied
Laboratory Medicine, Second Edition presents
interesting cases to illustrate the current use and
interpretation of the most commonly available clinical
laboratory tests. The cases present detailed descriptions
of the symptoms, diagnosis, and treatment of disease. The
book begins with an up-to-date general discussion of
selection and use of laboratory diagnostic and prognostic
tests. Cases are then grouped by category, including
cardiovascular, pulmonary, renal, liver, gastrointestinal,
endocrine, gynaecologic & obstetrical, haematological,
CNS, lipid, congenital, toxicological, infectious, and
autoimmune diseases.
Tietz's Applied Laboratory Medicine, Second Edition:
- Presents over 100 cases organised by disease group
- Reflects latest treatment and risk factor
guidelines, testing algorithms and recommendations
- Newly covers coagulopathies, infectious diseases,
and autoimmune diseases
- Provides excellent coverage of relevant
pathophysiology and biochemistry, and includes cases in
molecular diagnostics
- Discusses legal implications
This book is an invaluable resource for all clinical
chemists, clinical lab technologists, pathologists, and
allied health professionals. It is also of interest for
general practitioners, residents, medical students, and
educators.
Table of Contents:
Preface
Contributors
Part One: Cardiac Disease
Case 1. A 45-Year-Old Man with Substantial Chest Pain
Case 2. A 48-Year-Old Cocaine User with Chest Pain
Part Two: Pulmonary Diseases
Case 3. Shortness of Breath with Productive Cough
Case 4. Genotype–Phenotype Correlations in Cystic Fibrosis
Part Three: Renal Disease
Case 5. Man with Hypertension and Fever
Case 6. Oliguria with Metabolic Acidosis after Renal
Transplantation
Case 7. A Woman with Uremia, Pulmonary Infiltration, and
Hemoptysis
Case 8. Young Man with Edema and Decreased Urine Output
Case 9. A New Doctor for a Man with Diabetes and
Hypertension
Case 10. A Pain in the Back
Case 11. Refractory Hyponatremia with Lung Cancer
Part Four: Liver Diseases
Case 12. Adolescent Female with Tremor, Depression, and
Hepatitis
Case 13. Adult Male with New-Onset Ascites
Case 14. An Unexpected Finding
Case 15. I Did It Just Once - A 37-Year-Old Man with
Hepatitis C
Case 16. Obese Woman with Persistently Abnormal Liver
Enzymes
Part Five: Thyroid Diseases
Case 17. The Irritable Wife
Case 18. The Fatigued Attorney
Case 19. The Reluctant Chef
Part Six: Adrenocortical Diseases
Case 20. Child with Rapid Growth and Precocious Sexual
Maturation
Case 21. Weight Gain, Infertility, and Hypertension
Case 22. The Tired Teenager
Case 23. The Hypertensive Accountant
Case 24. Don’t “Take Two Aspirin and Call Me in the
Morning”
Case 25. Unpleasant Spells
Part Seven: Diabetes
Case 26. Recent Weight Loss and Polyuria in a 52-Year-Old
Man
Case 27. An Unconscious Diabetic Male
Case 28. A Diabetic Woman’s “Episode”
Part Eight: Calcium and Parathyroid Hormone (PTH)
Case 29. Bad to the Bone
Case 30. A Middle-Aged Woman with Colle’s Fracture
Case 31. A 10-Year-Old Boy with Pain-Induced Seizures
Part Nine: Miscellaneous Endocrine Diseases
Case 32. Laboratory Tests Ignored
Case 33. Hot Flashes and Abdominal Pain
Part Ten: Genetically Inherited Disorders
Case 34. Feed a Cold
Case 35. Acute Neonatal Ammonia Intoxication
Case 36. Not Just a Picky Eater
Case 37. The “Fussy” Neonate
Case 38. The “Sleepy” Neonate
Case 39. A Happy but Developmentally Delayed 5-Year-Old
Boy
Case 40. The Asymptomatic Iron Man
Part Eleven: Infectious Diseases
Case 41. Tired, Hot, and Lumpy
Case 42. A Rash on the Soles of the Feet
Case 43. When Life Gives You Lemons
Case 44. The Wheezing Woodsman
Case 45. Not Just Heartburn
Case 46. The Dangers of Yardwork
Part Twelve: Nonhematologic Malignancies
Case 47. An Important Finding on Routine Screening
Case 48. Increasing Abdominal Girth
Case 49. To Screen or Not to Screen?
Case 50. A Male with Confusing hCG Results
Case 51. Size Greater than Dates
Part Thirteen: Hematologic Malignancies
Case 52. A Man with Anemia and Lymphocytosis
Case 53. A Teenager with Pneumonia, Leukopenia, and
Ecchymoses
Case 54. A Middle-Aged Man with Chronic Foot Ulcer
Case 55. A Man with Progressive Effort Intolerance and
Splenomegaly
Case 56. A Man with Splenic Vein Thrombosis and
Polycythemia
Part Fourteen: Benign Hematologic Disorders
Case 57. A Child with Pneumonia
Case 58. A Man with a Tender Toe and Anemia
Case 59. A Woman with Fatigue and Pallor
Case 60. Pulseless Leg 9 Days after a Myocardial
Infarction
Case 61. Young Girl with a Bloody Knee Effusion
Case 62. A Young Man with Chest Pain Following a Knee
Injury
Case 63. A Young Woman with Postpartum Cerebral Venous
Thrombosis and Abnormal Coagulation Tests
Case 64. A Baby with Petechiae and Bruises
Case 65. Evaluation of a Reference Range Outlier
Case 66. A Woman with Abdominal Pain and Thrombocytopenia
Case 67. Sudden Jaundice and Painful Fingers
Case 68. The Good in “Bad” Fish Tacos
Case 69. The Jaundiced Mother
Part Fifteen: Porphyrias
Case 70. Young Woman with Recurrent Abdominal Pain
Case 71. A 9-Year-Old Boy with Skin Lesions and Headaches
Part Sixteen: Pharmacogenomics
Case 72. Personalized Medicine for a Renal Transplant
Patient
Case 73. Personalized Medicine for Pain Management
Case 74. A Man with Colitis and Pancytopeni
Case 75. A 46-Year-Old Female with a Painful, Swollen
Right Calf
Part Seventeen: Toxicology
Case 76. A Case of Mixed Club Drugs Abuse
Case 77. A 43-Year-Old Male with Chronic Pain
Case 78. Metabolic Acidosis of Unknown Origin Among Burn
Patients
Part Eighteen: Lipid Disorders
Case 79. The Family Reunion Party
Case 80. A 5-Year-Old Boy with Yellow-Orange Tonsils:
Hypoalphalipoproteinemia
Case 81. Worsening Diarrhea in a 5-Year-Old Girl
Case 82. A 4-Year-Old Girl with Yellow Xanthomas and
Arthritis
Part Nineteen: Autoimmune Diseases
Case 83. Woman with Morning Stiffness and Tender, Swollen
Joints
Case 84. Woman with a Rash and Lower Extremity Pain
Case 85. Woman with Diarrhea and Anemia
Part Twenty: Analytical Errors
Case 86. Where’s My Baby?
Case 87. Elevated Concentrations, but Not Elevated Enough
Case 88. I Want To Go Home!
Case 89. Is That Really the Calcium Value?
Part Twenty-One: Miscellaneous
Case 90. A Man with Fever and Acute Polyarthritis
Case 91. Middle-Aged Alcoholic with Jaundice and Ascites
Case 92. Where Did the Red Cells Go?
Index
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Exploring Scanning Probe
Microscopy with MATHEMATICA (Ed.2)
by Dror Sarid |
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Cat.# JW-LABM2 |
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Published:
2007 ISBN: 9783527406173 |
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This new and completely updated edition features not
only an accompanying CD-ROM, but also a new applications
section, reflecting the many breakthroughs in the field
over the last few years. It provides a complete set of
computational models that describe the physical phenomena
associated with scanning tunneling microscopy, atomic
force microscopy, and related technologies.
The result is both a solid professional reference and
an advanced-level text, beginning with the basics and
moving on to the latest techniques, experiments, and
theory. In the section devoted to atomic force microscopy,
the author describes the mechanical properties of
cantilevers, atomic force microscope tip-sample
interactions, and cantilever vibration characteristics.
This is followed by an in-depth treatment of theoretical
and practical aspects of tunneling phenomena, including
metal-insulator-metal tunneling and Fowler-Nordheim field
emission. The final section features applications, dealing
with, among others, Kelvin and Raman probe microscopy.
The self-contained presentation spares researchers
valuable time spent hunting through the technical
literature for the theoretical results required to
understand the models presented. The Mathematica code for
all the examples is included both in the book and on the
CD-ROM, affording the freedom to change the values and
parameters of specific problems as desired, or even modify
the programs themselves to suit various modeling needs.
Table of Contents:
Introduction
Presentation of Mass Spectra
Recording of Mass Spectra
Mass Spectra Quality
Statistical Data of Designer Drugs 2006
Structural and Empirical Formulas
Chemical Warfare Agents
Indexing
References
Internet Addresses
Acknowledgments
Authors
Mass Spectra
Compound Index |
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Mosby’s
Diagnostic and
Laboratory Test Reference 8e
by Kathleen Deska Pagana, and Timothy J. Pagana |
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Cat.# EL-LABM1 |
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Published: 2006 ISBN: 9780323046343 |
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Mosby’s Diagnostic and Laboratory Test Reference
is a comprehensive and up-to-date handbook that offers
clinically-relevant information on laboratory and
diagnostic tests. The test entries are organized
alphabetically for quick reference. Tests are presented in
a consistent format, which allows for concise coverage
without sacrificing the depth of detail necessary for a
thorough understanding of diagnostic
testing. Each test entry includes, where relevant:
alternate or abbreviated test names; type of test; normal
findings; possible critical values; test explanation and
related physiology; contraindications; potential
complications; interfering factors; procedure and patient
care (before, during, and after); and abnormal findings.
Related tests are extensively cross-referenced throughout
the book. The book’s portable size and durable cover make
it a handy on-the-spot reference. Key Features:
1. Tests organized alphabetically with A-to-Z thumb
tabs for quick reference.
2. Each test entry begins on a new page making tests easy
to find.
3. Normal findings for adult (male and female), elderly,
and pediatric patients are included where applicable to
provide complete clinical data.
4. Possible critical values are highlighted to alert the
reader to situations requiring immediate intervention.
5. Symbol next to drug-related interfering factors alerts
the reader to the effects of pharmacologic agents on
tests.
6. Icon for patient teaching-related care indicates
information that should be shared with patients and their
families. |
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Force Microscopy,
Applications in Biology
and Medicine
by Bhanu P. Jena, and J. K. Heinrich Horber
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Cat.# JW-LABM3 |
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Published: 2006 ISBN: 9780471396284 |
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A complete examination of the uses of the atomic force
microscope in biology and medicine This cutting-edge text, written by a team of leading
experts, is the first detailed examination of the latest,
most powerful scanning probe microscope, the atomic force
microscope (AFM). Using the AFM, in combination with
conventional tools and techniques, readers gain a profound
understanding of the cell, subcellular organelles, and
biomolecular structure and function.
The text begins with three chapters describing the
molecular machinery and mechanism of cell secretion and
membrane fusion in cells, using approaches that combine
AFM, electron microscopy, X-ray diffraction, photon
correlation spectroscopy, molecular biology, biochemistry,
and electrophysiology. The discovery of a new cellular
structure the "porosome" or fusion pore--the cells
secretory machinery, the molecular mechanism of membrane
fusion in cells, and the expulsion of intravesicular
contents during cell secretion are outlined in the first
three chapters. The book also covers:
- Identification of the "porosome" in the growth
hormone secreting cell of the pituitary gland
- Probing the structural and physical properties of
microbial cell surfaces
- Scanning probe microscopic characterization of the
higher plant cell wall and its components
- Case studies of nano drug delivery systems using
engineered dendrimers
- AFM techniques for studying living cells
- Investigating the intermolecular forces of leukocyte
adhesion molecules
- Protein-protein interactions
- Micromechanical properties of lipid bilayers and
vesicles
The text concludes with four chapters that examine
new and emerging approaches in the use of force
microscopy in biology and medicine.
This text is ideal for advanced undergraduate and
graduate students and researchers in cell and molecular
biology, genetics, genomics, physiology, neuroscience,
biophysics, and biochemistry. Not only does it provide
the theory, but also practical considerations such as
the selection of the right tools and approach.
Table of Contents:
Preface
Contributors
Chapter 1. Porosome: The Universal Secretory Machinery
in Cells
Chapter 2. Molecular Mechanism of SNARE-Induced Membrane
Fusion
Chapter 3. Molecular Mechanism of Secretory Vesicle
Content Expulsion During Cell Secretion
Chapter 4. Fusion Pores in Growth-Hormone-Secreting
Cells of the Pituitary Gland: An AFM Study
Chapter 5. Properties of Microbial Cell Surfaces
Examined by Atomic Force Microscopy
Chapter 6. Scanning Probe Microscopy of Plant Cell Wall
and Its Constituents
Chapter 7. Cellular Interactions of Nano Drug Delivery
Systems
Chapter 8. Adapting AFM Techniques for Studies on Living
Cells
Chapter 9. Intermolecular Forces of Leukocyte Adhesion
Molecules
Chapter 10. Mechanisms of Avidity Modulation in
Leukocyte Adhesion Studied by AFM
Chapter 11. Resolving the Thickness and Micromechanical
Properties of Lipid Bilayers and Vesicles Using AFM
Chapter 12. Imaging Soft Surfaces by SFM
Chapter 13. High-Speed Atomic Force Microscopy of
Biomolecules in Motion
Chapter 14. Atomic Force Microscopy in Cytogenetics
Chapter 15. Atomic Force Microscopy in the Study of
Macromolecular Interactions in Hemostasis and
Thrombosis: Utility for Investigation of the
Antiphospholipid Syndrome
Index |
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Exploring the Human Plasma Proteome
by Gilbert S. Omenn
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Cat.# JW-LABM4 |
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Published: 2006 ISBN: 9783527317578 |
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On the cutting edge of medical diagnostics, plasma
proteomics promises to generate a new wave of technologies
to help identify many different diseases and disease
risks.
Plasma and serum are the preferred non-invasive specimens
to test normal individuals, at-risk groups, and patients
for protein biomarkers discovered and validated to reflect
physiological, pathological, and pharmacological
phenotypes. These specimens present enormous challenges
due to extreme complexity, huge dynamic range in protein
concentrations, non-standardized methods of sample
processing, and intra- and inter-individual variation from
genetics, diet, smoking, hormones, and other sources. This
book presents the major findings from the collaborative
Plasma Proteome Project organized by the international
Human Proteome Organization (HUPO). The chapters are drawn
from a larger set of publications in the journal
PROTEOMICS. This book provides a valuable foundation for
development and applications of proteomics. Table of
Contents:
1. Overview of the HUPO Plasma Proteome Project:
Results from the pilot phase with 35 collaborating
laboratories and multiple analytical groups, generating a
core dataset of 3020 proteins and a publicly-available
database
1.1 Introduction
1.2 PPP reference specimens
1.3 Bioinformatics and technology platforms
1.3.1 Constructing a PPP database for human plasma and
serum proteins
1.3.2 Analysis of confidence of protein identifications
1.3.3 Quantitation of protein concentrations
1.4 Comparing the specimens
1.4.1 Choice of specimen and collection and handling
variables
1.4.2 Depletion of abundant proteins followed by
fractionation of intact proteins
1.4.3 Comparing technology platforms
1.4.4 Alternative search algorithms for peptide and
protein identification
1.4.5 Independent analyses of raw spectra or peaklists
1.4.6 Comparisons with published reports
1.4.7 Direct MS (SELDI) analyses
1.4.8 Annotation of the HUPO PPP core dataset(s)
1.4.9 Identification of novel peptides using whole genome ORF
search
1.4.10 Identification of microbial proteins in the
circulation
1.5 Discussion
1.6 References
2. Data management and preliminary data analysis in the pilot phase
of the HUPO Plasma Proteome Project
2.1 Introduction
2.2 Materials and methods
2.2.1 Development of the data model
2.2.2 Data submission process
2.2.3 Design of the data repository
2.2.4 Receipt of the data
2.3 Inference from peptide level to protein level
2.4 Summary of contributed data
2.4.1 Cross-laboratory comparison, confidence of the
identifications
2.5 False-positive identifications
2.6 Data dissemination
2.7 Discussion
2.8 Concluding remarks
2.9 Computer technologies applied
2.10 References
3. HUPO Plasma Proteome Project specimen collection and
handling: Towards the standardization of parameters for
plasma proteome samples
3.1 Introduction
3.2 Materials and methods
3.2.1 HUPO reference sample collection protocol
3.2.2 Differential peptide display
3.2.3 Stability studies and SELDI analysis
3.2.4 SDS-PAGE analysis for stability studies
3.2.5 2-DE for stability studies
3.2.6 SELDI-TOF analysis for protease inhibitor studies
3.2.7 2-DE for plasma protease inhibition studies
3.2.8 Tryptic digestion and protein identification for protease
inhibition studies
3.2.9 Antibody microarray analysis using two-color rolling circle
amplification
3.3 Results
3.3.1 Comparisons of specimen types
3.3.2 Evaluation of storage and handling conditions
3.3.3 Evaluations of the use of protease inhibitors
3.4 Discussion
3.4.1 Other pre-analytical variables and control
considerations
3.4.2 Reference materials
3.5 Concluding remarks
3.6 References
4. Immunoassay and antibody microarray analysis of the HUPO
Plasma Proteome Project reference specimens: Systematic
variation between sample types and calibration of mass
spectrometry data
4.1 Introduction
4.2 Materials and methods
4.2.1 Reference specimens
4.2.2 DB immunoassays
4.2.3 Antibody arrays at GNF
4.2.4 Antibody microarrays at MSI
4.2.5 Antibody microarrays at VARI
4.2.6 Retrieval and matching of IPI numbers for the analytes
4.3 Results
4.3.1 Antibody-based measurements of the HUPO reference specimens
4.3.2 Systematic variation between the preparation methods
of the PPP reference specimens
4.3.3 Consistent alterations in specific protein
abundances
4.3.4 Linkage of MS data and antibody-based measurements
4.4 Discussion
4.5 References
5. Depletion of multiple high-abundance proteins
improves protein profiling capacities of human serum and
plasma
5.1 Introduction
5.2 Materials and methods
5.2.1 Serum/plasma collection
5.2.2 MARS
5.2.3 Multiple affinity removal spin cartridge
5.2.4 Microscale solution IEF (MicroSol IEF) (ZOOM-IEF)
fractionation
5.2.5 2-DE
5.2.6 LC-MS/MS
5.3 Results
5.3.1 Depletion of major proteins to enhance detection of
lower abundance proteins
5.3.2 Evaluation of high-abundance protein removal using
2-DE
5.3.3 Specificity of major protein depletion
5.3.4 Impact of Top-6 protein depletion on detection of
lower abundance proteins using 2-D gels
5.3.5 Combining Top-6 protein depletion with microSol IEF
prefractionation and narrow pH range gels
5.3.6 Analysis of Top-6 depleted serum and plasma using protein
array pixelation
5.4 Discussion
5.5 References
6. A novel four-dimensional strategy combining protein
and peptide separation methods enables detection of
low-abundance proteins in human plasma and serum proteomes
6.1 Introduction
6.2 Materials and methods
6.2.1 Materials
6.2.2 Top six protein depletion
6.2.3 MicroSol-IEF fractionation
6.2.4 Protein array pixelation
6.2.5 LC-ESI-MS/MS methods
6.2.6 Data analysis
6.3 Results and discussion
6.3.1 Protein array pixelation strategy
6.3.2 Optimization of protein array pixelation
6.3.3 Total analysis time for protein array pixelation of human
plasma proteome
6.3.4 Systematic protein array pixelation of the human plasma
proteome
6.3.5 Systematic protein array pixelation of the human serum
proteome
6.3.6 Analyses of human plasma and serum proteomes using HUPO
filter criteria
6.4 Concluding remarks
6.5 References.
7. A study of glycoproteins in human serum and plasma reference
standards (HUPO) using multilectin affinity chromatography coupled
with RPLC-MS/MS
7.1 Introduction
7.2 Materials and methods
7.2.1 Materials
7.2.2 Isolating glycoproteins using multilectin affinity columns
7.2.3 Analysis of glycoproteins on LC-LCQ MS
7.2.4 Analysis of glycoproteins on LC-LTQ MS
7.2.5 Protein database search
7.3 Results and discussion
7.3.1 Protein IDs from the plasma and serum samples
7.3.2 Comparison between serum and plasma glycoproteomes
7.3.3 Comparison of the glycoproteins present in the samples
collected from three ethnic groups
7.4 Concluding remarks
7.5 References
8. Evaluation of prefractionation methods as a
preparatory step for multidimensional based chromatography
of serum proteins
8.1 Introduction
8.1.1 The HUPO Plasma Proteome Project (PPP) goals and the serum
as a complex sample
8.1.2 The scope of this manuscript
8.2 Materials and methods
8.2.1 Depletion from serum albumin and antibodies
8.2.2 MudPIT and mass segmentation
8.2.3 Protein separation by SDS-PAGE
8.2.4 SCX separation of intact proteins followed by MudPIT
8.2.5 Liquid-phase IEF followed by MudPIT
8.2.6 Capillary RP-LC-MS/MS
8.2.7 MS data processing and peptide/protein
identifications
8.3 Results
8.3.1 Comparisons between the prefractionation methods
8.3.2 Identification of different protein subsets
8.3.3 Proteins identified by only one prefractionation method
8.3.4 Different methods resulted in diverse peptide
coverage
8.4 Discussion
8.4.1 Giving every peptide a chance
8.4.2 How to identify more of the marginal proteins
8.4.3 Clustering and comparing raw data
8.4.4 High throughput and ruggedness versus high
sensitivity
8.4.5 The cost effectiveness of the different methods
8.5 Concluding remarks
8.6 References
9. Efficient prefractionation of low-abundance proteins
in human plasma and construction of a two-dimensional map
9.1 Introduction
9.2 Materials and methods
9.2.1 Plasma sample preparation
9.2.2 Depletion of major abundance proteins with an immunoaffinity
column
9.2.3 2-DE
9.2.4 Identification of proteins by MS
9.2.5 Fractionation of the plasma samples by FFE
9.2.6 LC-MS/MS
9.2.7 Bioinformatics
9.3 Results and discussion
9.3.1 2-DE map of human plasma devoid of high-abundance
proteins
9.3.2 Expression of different anticoagulant-treated plasma
9.3.3 FFE/1-DE/nanoLC-MS/MS and 2-DE/MALDI-TOF
9.4 Concluding remarks
9.5 References
10. Comparison of alternative analytical techniques for the characterisation of the human serum proteome in HUPO
Plasma Proteome Project
10.1 Introduction
10.2 Materials and methods
10.2.1 Materials
10.2.2 Human serum samples
10.2.3 Integrated strategy for characterising analytical
approaches
10.2.4 Depletion of the highly abundant serum proteins by
MARS
10.2.5 Desalting and concentrating the flow-through fractions by
centrifugal ultrafiltration
10.2.6 Fractionation of depleted serum samples by
anion-exchange HPLC
10.2.7 Protein fractionation by 2-D HPLC with nonporous
RP-HPLC
10.2.8 The 2-DE strategy for the analysis of serum
proteins
10.2.8.1 2-DE
10.2.8.2 In-gel digestion via automated workstation
10.2.8.3 Protein spot identification by MALDI-TOF-MS/MS
10.2.9 Shotgun strategy for the analysis of serum proteins
10.2.10 Protein fractionation strategy for the analysis of
serum proteins
10.2.11 Offline shotgun strategy for the analysis of serum
proteins
10.2.12 Optimised nanoRP-HPLC-nanoESI IT-MS/MS for the reanalysis
of offline SCX-separated peptides (offline-nanospray strategy)
10.3 Integrated analysis of the whole data sets
10.3.1 Protein grouping analysis
10.3.2 Sequence clustering
10.4 Results and discussion
10.4.1 Depletion of the highly abundant serum proteins
10.4.2 The 2-DE strategy for the analysis of serum
proteins
10.4.3 2-D HPLC fractionation for the analysis of serum
proteins
10.4.4 Shotgun strategy for the analysis of serumproteins with
online SCX
10.4.5 Shotgun strategy for the analysis of serumproteins with
offline SCX
10.4.6 Offline SCX shotgun-nanospray strategy for the analysis of
serum proteins
10.4.7 Comparison of the five strategies for the analysis
of the human serum proteome
10.5 Concluding remarks
10.6 References
11. A proteomic study of the HUPO Plasma Proteome
Project’s pilot samples using an accurate mass and time
tag strategy
11.1 Introduction
11.2 Materials and methods
11.2.1 Human blood serum and plasma
11.2.2 Depletion of Igs and trypsin digestion
11.2.3 Peptide cleanup
11.2.4 Capillary RP-LC
11.2.5 IT-MS
11.2.6 SEQUEST identification of peptides
11.2.7 Putative mass and time tag database from SEQUESTresults
11.2.8 FT-ICR-MS
11.2.9 cLC-FT-ICR MS data analysis
11.2.10 OmniViz cluster and visual analysis
11.3 Results
11.3.1 PuMT tag database
11.3.2 Summary of peptide/protein identifications by AMT
tags
11.3.3 Protein concentration estimates from ion current
11.3.4 Global protein analysis
11.4 Discussion
11.4.1 Application of FT-ICR MS as a proteomic technology bridge
11.4.2 Confidence in any MS-based proteomic approach
11.4.3 Peptide/protein redundancy
11.4.4 Identification sensitivity versus specificity
11.4.5 Throughput and differential analysis
11.5 References
12. Analysis of Human Proteome Organization Plasma Proteome Project
(HUPOPPP) reference specimens using surface enhanced laser
desorption/ionization-time of flight (SELDI-TOF) mass
spectrometry: Multi-institution correlation of spectra and
identification of biomarkers
12.1 Introduction
12.2 Materials and methods
12.2.1 Sample preparation
12.2.2 Sample preprocessing
12.2.3 Target (CM10) chip preparation and sample
incubation
12.2.4 Scanning protocol
12.2.5 Data processing
12.2.6 Bioinformatics analysis of data and correlation
coefficient matrix
12.2.7 Protein purification, SDS-PAGE analysis, and
extraction of proteins
12.2.8 Peptide mass fingerprinting (PMF)
12.2.9 MS/MS analysis
12.2.10 Western blot analysis
12.3 Results
12.4 Discussion
12.5 References
13. An evaluation, comparison, and accurate benchmarking of several
publicly available MS/MS search algorithms: Sensitivity and
specificity analysis
13.1 Introduction
13.1.1 Heuristic algorithms
13.1.2 Probabilistic algorithms
13.2 Materials and methods
13.2.1 HUPO-PPP reference specimens
13.2.2 Sample preparation and MS analysis
13.2.3 Protein sequence databases
13.2.4 MS/MS database search strategy
13.2.5 Web interface for data validation, integration, and
cross annotation
13.2.6 ROC curve generation
13.3 Results and discussion
13.3.1 Comparison of MS/MS search algorithms
13.4 Concluding remarks
13.5 References
14. Human Plasma Peptide Atlas
14.1 References
15. Do we want our data raw? Including binary mass
spectrometry data in public proteomics data repositories
15.1 References
16. A functional annotation of subproteomes in human
plasma
16.1 Introduction
16.2 Materials and methods
16.2.1 Coagulation pathway and protein interaction network
analysis
16.2.2 Gene ontology annotations
16.2.3 Analysis of MS-derived data for identification of
proteolytic events and post-translational modifications
16.3 Results and discussion
16.3.1 Bioinformatic analyses of the functional subproteomes
16.3.2 Proteins involved in the blood coagulation pathway
16.3.3 Proteins potentially derived from mononuclear
phagocytes
16.3.4 Proteins involved in inflammation
16.3.5 Analyzing the peptide subproteome of human plasma
16.3.6 Liver related plasma proteins
16.3.7 Cardiovascular system related plasma proteins
16.3.8 Glycoproteins
16.3.9 DNA-binding proteins
16.3.10 Annotation through reanalysis of mass spectrometry
data
16.4 Concluding remarks
16.5 References
17. Cardiovascular-related proteins identified in human plasma by
the HUPO Plasma Proteome Project Pilot Phase
17.1 Introduction
17.1.1 HUPO Plasma Proteome Project pilot phase
17.1.2 Need for novel insights into cardiovascular disease
17.2 Materials and methods
17.3 Groups of cardiovascular-related proteins
17.3.1 Markers of inflammation and CVD
17.3.2 Vascular and coagulation proteins
17.3.3 Signaling proteins
17.3.4 Growth- and differentiation-associated proteins
17.3.5 Cytoskeletal proteins
17.3.6 Transcription factors
17.3.7 Channel and receptor proteins
17.3.8 Heart failure- and remodeling-related proteins
17.4 Functional analyses and implications
17.4.1 Organ specific cardiovascular-related proteins in
plasma
17.4.2 Novel cardiovascular-related proteins identified in
plasma
17.5 Methodology considerations
17.6 Conclusions and future directions
17.7 References
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Microfluidic Applications in
Biology:
From Technologies to Systems Biology
by Niels Lion, Joel S. Rossier, and Hubert H. Girault |
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Cat.# JW-LABM5 |
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Published: 2006 ISBN: 9783527317615 |
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Taken from the high-impact journal Electrophoresis,
these research articles on microfluidics and its
application in a range of biological fields are of high
interest and now available to a new readership. Alongside
several review articles, this volume represents a current
overview of the latest research.
Table of Contents:
Chapter 1.On-line chemiluminescence detection for
isoelectric focusing of heme proteins on microchips.
Chapter 2. A simple microfluidic system for efficient
capillary electrophoretic separation and sensitive fluorimetric detection of DNA fragments using
light-emitting diode and liquid-core waveguide techniques.
Chapter 3. Determination ob biochemical species on
electrophoresis chips with an external contactless
conductivity detector.
Chapter 4. In-channel indirect amperometric detection of
nonelectroactive anions for electrophoresis on a
poly(dimethylsiloxane) microchip.
Chapter 5. Coupling on-chip solid-phase extraction to
electrospray mass spectrometry through an integrated
electrospray tip.
Chapter 6. Electrospray interfacing of polymer
microfluidics to MALDI-MS.
Chapter 7. Nanoliquid chromatography-mass spectrometry of
oligosaccharides employing graphitized carbon
chromatography on microchip with a high-accuracy mass
analyzer.
Chapter 8. Chip electrospray mass spectrometry for
carbohydrate analysis.
Chapter 9. Utility of lab-on-a-chip technology for
high-throughput nucleic acid and protein analysis.
Chapter 10. Analysis of amino acids and proteins using a
poly (methyl methacrylate) microfluidic system.
Chapter 11. Single cell manipulation, analytics, and
label-free protein detection microfluidic devices for
systems nanobiology.
Chapter 12. Fast immobilization of probe beads by
dielectrophoresis-controlled adhesion in a versatile
microfluidic platform for affinity assay.
Chapter 13. Droplet fusion by alternating current (AC)
field electrocoalescence in microchannels.
Chapter 14. Microfluidic flow focusing: Drop size and
scaling in pressure versus flow-rate-driven pumping.
Chapter 15. Aligning fast alternating current
electroosmotic flow fields and characteristic frequencies
with dielectrophoretic traps to achieve rapid bacteria
detection.
Chapter 16. Dielectrophoresis induced clustering regimes
of viable yeast cells.
Chapter 17. 3-D electrode designs for flow-through
dielectrophoretic systems.
Chapter 18. Parallel mixing of photolithographically
defined nanoliter volumes using elastomeric microvalve
arrays.
Chapter 19. Method development and measurements of
endogenous serine/threonine akt phosphorylation using
capillary electrophoresis for systems biology.
Chapter 20. Comparison of a pump-around, a
diffusion-driven, and a shear-driven system for the
hybridization of mouse lung and testis total RNA on microarrays.
Chapter 21. Microfluidic devices for the analysis of
apoptosis.
Chapter 22. Effect of iron restriction on outer membrane
protein composition of pseudomonas strains studied by
conventional and microchip electrophoresis.
Index. |
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Tissue
Engineering:
From Cell Biology to Artificial Organs
by Will W. Minuth, Raimund Strehl, and Karl
Schumacher |
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Cat.# JW-LABM6 |
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Published:
2005 ISBN: 9783527311866 |
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Comprehensive in its scope and illustrated in detail,
this practical book provides a fundamental insight into
the complex world of tissue development and artificial
cell culture using tissue engineering.
The introductory chapters cover basic cell biology and
cellular development as well as cell culture, with a main
emphasis on ways of differentiating tissue and the
critical evaluation of the properties of maturing tissue
constructs. The authors also focus on the use of stem
cells from the most varied sources in tissue engineering.
The whole is rounded off by an exceptionally
wide-ranging glossary containing some 1,000 key words from
the fields of cell biology, cell culture development and
tissue engineering.
Table of Contents:
Preface
1. Developmental processes
2 Cells and Tissue
2.1 The Cell
2.2 Tissue Types
2.3 Relevance of the ECM
2.4 Emergence of Tissue
2.5 Regeneration
3 Classical Culture Methods.
3.1 History
3.2 First Cultures
3.3 Tissue Culture
3.4 Organ Culture
4. Tissue Engineering
4.1 Cell Therapies
4.2 Tissue Constructs
4.3 Organ Modules
4.4 Cosmetic Measures
5. Concepts of Tissue Creation
5.1 Sources
5.2 Stem Cells
5.3 Cells from Tissues
5.4 Matrices
5.5 Culture Methods for Tissue Engineering
5.6 Perfusion Culture
6. Maturation of Tissue Constructs
6.1 Primary and Secondary Contacts
6.2 Building Structures
6.3 Terminal Differentiation
6.4 Impact of the Culture Environment on the Development
of Tissue
6.5 Step by Step
6.6 Tissue Functions after Implantation
6.7 The Three Steps of Tissue Development
7. Development of the Perfusion System Tissue Factory
7.1 Requirements of the Culture System
7.2 Artificial Interstitium
7.3 Smart Matrices
7.4 Optimal Housing for the Perfusion System
7.5 Supply of the Maturing Tissue with Medium
7.6 Synopsis
8. Ensuring Tissue Quality
8.1 Norms and Cell Biology
8.2 Evaluating Complexity
8.3 Expression Behavior
8.4 Suitability of a Scaffold
8.5 Hidden Heterogeneity
8.6 Investigating Cellular Ultrastructures
8.7 Functional Transfer
8.8 Quality Assurance
8.9 Implant–Host Interaction
9. Perspectives
10. Ethical Aspects
Glossary
Companies
Literature
Subject Index
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The Science of Laboratory
Diagnosis
by John Crocker, and David Burnett |
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Cat.# JW-LABM7 |
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Published: 2005 ISBN: 9780470859124 |
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This fully revised and updated edition of The Science
of Laboratory Diagnosis provides a concise description of
all common laboratory tests available in medical practice
with notes on their application, the accuracy of each
test, the historical background to the adoption of various
tests and their effectiveness in diagnosis.
- Well illustrated, with clear headings, tables, flow charts
and pathology slides, most in full colour
- Provides an accessible reference book in which relevant
information can be found easily
- Page design facilitates rapid assimilation of principles
and key facts
- All the chapters have been updated and new material has
been introduced to cover recently developed techniques,
such as fluid-based cytology, telepathology and proteomics
The Science of Laboratory Diagnosis, Second Edition is an
essential primary reference source for everyone working in
a clinical laboratory. This book is essential reading for
pathologists, biomedical scientists, medical laboratory
scientific officers and all clinicians involved in
laboratory research.
Reviews of the First Edition:
"The text is concise, wide-ranging and easy to digest. The
ease of extraction of the important facts make it an ideal
source of information for use in a variety of situations
from the postgraduate examination to the clinical
directors' board meeting." BULLETIN OF THE ROYAL COLLEGE
OF PATHOLOGISTS
"The editors have done a marvellous job, more than
fulfilling their stated aim of producing a volume
describing the multidisciplinary state of modern pathology
which will be of interest to a wide range of readers. … I
was particularly impressed by the many tables and flow
charts, which can be used as aids to decision making."
JOURNAL OF CLINICAL PATHOLOGY
"This is an excellent book to dip into and get a feel for
techniques used in the other disciplines of pathology.&qu | | |